Mercury is a highly toxic metal that can cause harm to environment and human health. As atmospheric deposition is the main source of total Hg input to aquatic system in remote and pristine regions, almost all the studies on atmospheric Hg pollution history concentrated in these areas, while the studies in non-remote areas are much limited, especially for the long history records. In this study, Huguangyan Maar Lake, an undisturbed lake system at low altitude in China, was selected to reconstruct the atmospheric mercury pollution history. Variation patterns of TOC, Hg and non-residual Sr in the sediment core indicated that, compared to the direct atmospheric Hg deposition, the effect of either Hg scavenging from water column by algae or the catchment inputs of previously deposited Hg on the Hg accumulation in the lake sediment was limited. The sediment Hg content in Huguangyan Lake was mainly controlled by the atmospheric Hg deposition, and thus accurately reflected the atmospheric Hg pollution history. The Hg-a (Hg content from atmospheric deposition) in Huguangyan Lake presented a comparable variation pattern to that in remote sites. It had the same variation trend as the global atmospheric Hg before 1950 CE, which could be attributed to the Industrial Revolution. After that, it was mainly controlled by Hg emissions from Asian countries. The variation of Hg-a also indicated that atmospheric Hg deposition accelerated significantly since 2000 CE. This study, along with other investigations in remote sites in China, showed that the sediment Hg in Huguangyan Lake responded to the atmospheric Hg pollution more sensitively than in the alpine regions. It should be noted that, the more intensive acceleration of Hg deposition in Huguangyan Lake may imply that the South of China suffered from much more serious atmospheric Hg pollution than previous studies revealed.